God of Knowledge (Freeport) = Tinel (Book of the Righteous)
God of the Sea (F) = Shalimyr (BotR)
God of Pirates (F) = DM's Option - CE cult of Darmon or Thallos (BotR)
Warriors (F) = Terak (BotR)
Other mentioned churches in Freeport:
Yig (Freeport) = See the Tree of Life support site for ideas in the mythology section.
Murder (Freeport) = Canarak (BotR)
Unspeakable One (Freeport) = Again, see Tree of Life support site for ideas.
Retribution & Justice (Freeport) = Maal (BotR)
The area where the two aren't directly analagous is Yig and the Unspeakable One simply because these are very Freeport-specific and we wanted to keep BotR open to all campaigns. However, since publication, Joe Kushner has kindly provided some excellent ideas for who these gods might be within the BotR cosmology.
Here's the URL for the Tree of Life:
http://www.greenronin.com/tree_of_life/ ... x=main.htm